Basic Information
Locus ID:
gene_14035
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 92703466 | 92813045 | - | gene_14035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 481,847.78 Da | 43.16 | 89.87 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16910 | Repeating coiled region of VPS13 | 554 | 775 | 9.5E-31 | IPR031642 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2789 | 2933 | 5.1E-9 | IPR010482 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3290 | 3457 | 2.0E-13 | IPR009543 |
| Pfam | PF00169 | PH domain | 795 | 903 | 4.6E-7 | IPR001849 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 107 | 1.6E-30 | IPR026854 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 373 | 2.0E-67 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1964 | 2112 | 1.3E-10 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2182 | 2330 | 3.8E-9 | IPR009291 |
| SUPERFAMILY | SSF50729 | PH domain-like | 789 | 922 | 3.52E-10 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 775 | 903 | 3.7E-8 | IPR011993 |
| SMART | SM00233 | PH_update | 793 | 906 | 1.7E-9 | IPR001849 |
| SMART | SM00694 | dysfc | 2901 | 2938 | 0.003 | IPR006614 |
| ProSiteProfiles | PS50003 | PH domain profile. | 792 | 904 | 9.9192 | IPR001849 |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_028077973.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC114279888 [Camellia sinensis] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J4ZTK8 | PH domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_012573 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology