Basic Information
Locus ID:
gene_14008
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 11226814 | 11228893 | - | gene_14008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 39,228.60 Da | 39.19 | 79.50 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08238 | Sel1 repeat | 132 | 170 | 0.33 | IPR006597 |
| Pfam | PF01753 | MYND finger | 288 | 328 | 2.2E-5 | IPR002893 |
| Pfam | PF08238 | Sel1 repeat | 172 | 201 | 0.063 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 100 | 112 | 13.0 | IPR006597 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 284 | 332 | 1.92E-8 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 84 | 201 | 2.22E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 81 | 1.14E-6 | IPR036047 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 58 | 212 | 2.7E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 278 | 333 | 2.5E-9 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 286 | 328 | 10.9113 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_002297844.1 | F-box protein At1g67340 [Populus trichocarpa] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9AF49 | MYND-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology