Basic Information
Locus ID:
gene_13994
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 89917408 | 89925144 | - | gene_13994 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 32,209.99 Da | 39.77 | 78.72 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 73 | 6.9E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 7 | 87 | 1.11E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 6 | 83 | 3.1E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 8 | 77 | 3.5E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 81 | 11.417624 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 283 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_050234621.1 | binding partner of ACD11 1-like [Mercurialis annua] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8DHC3 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_001132 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology