Basic Information
Locus ID:
gene_13979
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 88899575 | 88912297 | - | gene_13979 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 99,961.90 Da | 51.37 | 78.24 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 427 | 483 | 1.10961E-30 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 492 | 854 | 1.3E-36 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 429 | 481 | 1.3E-8 | IPR023780 |
| Pfam | PF01426 | BAH domain | 180 | 276 | 3.6E-10 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 321 | 854 | 9.97E-78 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 419 | 482 | 3.85E-11 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 171 | 263 | 1.9E-24 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 321 | 871 | 3.5E-238 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 646 | 820 | 3.5E-238 | - |
| SMART | SM00439 | BAH_4 | 166 | 278 | 5.6E-13 | IPR001025 |
| SMART | SM00298 | chromo_7 | 427 | 486 | 1.2E-5 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 496 | 851 | 9.3E-31 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 160 | 278 | 14.620052 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 319 | 861 | 45.20776 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 428 | 481 | 11.5439 | IPR000953 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 836 | 854 | - | IPR031303 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 587 | 600 | 9.6E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 541 | 555 | 9.6E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 320 | 336 | 9.6E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 133 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021765549.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A803LTS4 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology