Basic Information
Locus ID:
gene_1388
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 39281771 | 39285001 | - | gene_1388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 54,164.71 Da | 31.43 | 72.96 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 324 | 358 | 0.0033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 203 | 237 | 4.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 363 | 397 | 0.017 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 168 | 192 | 5.97E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 199 | 488 | 1.1E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 190 | 291 | 3.1E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 292 | 493 | 8.3E-33 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 169 | 193 | 0.091 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 32 | 56 | 0.63 | IPR000571 |
| SMART | SM00320 | WD40_4 | 402 | 445 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 275 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 485 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 358 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 398 | 6.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 314 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 237 | 1.9E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 205 | 237 | 10.601049 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 328 | 361 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 205 | 246 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 36 | 57 | 10.276935 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 328 | 367 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 167 | 194 | 12.473984 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 345 | 359 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 224 | 238 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 345 | 359 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 385 | 399 | 1.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 160 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_048491280.1 | zinc finger CCCH domain-containing protein 48 [Beta vulgaris subsp. vulgaris] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803L354 | Zinc finger CCCH domain-containing protein 48-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology