Basic Information
Locus ID:
gene_13826
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
NAC transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 7166473 | 7172789 | - | gene_13826 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 33,188.48 Da | 37.39 | 81.07 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 40 | 172 | 1.9E-19 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 35 | 175 | 5.23E-25 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 48 | 206 | 3.0E-18 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 39 | 190 | 25.447952 | IPR003441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04070.2 | NAC domain containing protein 47. | 0 |
| RefSeq | XP_024173025.1 | NAC transcription factor 56 [Rosa chinensis] | 0 |
| Q84TD6 | NAC transcription factor 47 OS=Arabidopsis thaliana OX=3702 GN=NAC047 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P6QSM8 | Putative transcription factor NAM family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0399591 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 14 | gene_13821, gene_13822, gene_13823, gene_13824, gene_13825 ... |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g113950 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31036, Sbi_jg58246 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25853 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004674 |
| Apiaceae | Apium graveolens | 1 | Ag7G00585 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G00345 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG01.2683, evm.TU.LG01.2686, evm.TU.LG03.2322 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.841 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-14516, nbisL1-mrna-25177, nbisL1-mrna-25181 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20286 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12437, nbisL1-mrna-5011 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.2 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008688 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-860 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8500 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623196 |
| Solanaceae | Solanum chilense | 1 | SOLCI005645400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009092 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19339_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2341 |