Basic Information
Locus ID:
gene_13806
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 6726003 | 6733819 | - | gene_13806 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 155,080.06 Da | 37.27 | 91.46 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 1053 | 1101 | 3.3E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 712 | 761 | 2.5E-14 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 796 | 839 | 4.2E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 572 | 620 | 5.6E-16 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1130 | 1156 | 0.074 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 432 | 481 | 2.1E-15 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 502 | 551 | 6.1E-16 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 643 | 689 | 1.6E-16 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1240 | 1264 | 0.029 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1202 | 1229 | 0.16 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1158 | 1185 | 1.9E-5 | IPR002885 |
| Pfam | PF00011 | Hsp20/alpha crystallin family | 77 | 150 | 1.9E-4 | IPR002068 |
| Pfam | PF01535 | PPR repeat | 402 | 429 | 4.9E-4 | IPR002885 |
| SUPERFAMILY | SSF49764 | HSP20-like chaperones | 46 | 150 | 5.23E-16 | IPR008978 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 462 | 533 | 1.6E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 706 | 778 | 7.1E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 291 | 461 | 1.4E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 606 | 696 | 5.1E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 943 | 1107 | 2.2E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 534 | 605 | 8.0E-21 | IPR011990 |
| Gene3D | G3DSA:2.60.40.790 | - | 13 | 152 | 1.9E-13 | IPR008978 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1108 | 1192 | 4.1E-13 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1193 | 1361 | 4.3E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 779 | 900 | 1.0E-14 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 798 | 831 | 1.8E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 435 | 469 | 7.7E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 470 | 503 | 1.2E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 645 | 679 | 1.5E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1158 | 1188 | 6.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 576 | 609 | 5.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1056 | 1088 | 6.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 610 | 637 | 3.9E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 401 | 433 | 4.7E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 681 | 714 | 3.8E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 715 | 748 | 3.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 505 | 539 | 5.8E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 540 | 574 | 2.6E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 643 | 677 | 14.677238 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1156 | 1190 | 10.676364 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 468 | 502 | 11.860184 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 398 | 432 | 10.588674 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 503 | 537 | 13.08785 | IPR002885 |
| ProSiteProfiles | PS01031 | Small heat shock protein (sHSP) domain profile. | 65 | 162 | 12.558856 | IPR002068 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 433 | 467 | 13.624953 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 608 | 642 | 11.454616 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 796 | 830 | 11.608074 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 538 | 572 | 12.41921 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 713 | 747 | 11.860184 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1054 | 1088 | 9.525427 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 678 | 712 | 11.860184 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 573 | 607 | 12.430172 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74400.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021859918.1 | putative pentatricopeptide repeat-containing protein At1g74400 [Spinacia oleracea] | 0 |
| Q9CA73 | Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E68 PE=3 SV=1 | 0 | |
| TrEMBL | A0A7C9EQD9 | Peptidylprolyl isomerase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13806 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000813 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114330 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004662 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54733, Sgl60034 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0021740 |
| Apiaceae | Apium graveolens | 1 | Ag4G00372 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G002100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714846 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G10467 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018864m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29560.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g047950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1743 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1920 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05480 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2665, evm.TU.LG14.1799 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11930 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632922 |
| Solanaceae | Solanum chilense | 1 | SOLCI000669400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012932 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10188 |
| Zosteraceae | Zostera marina | 1 | Zosma06g09680.v3.1 |