Basic Information
Locus ID:
gene_13804
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 6717313 | 6722513 | - | gene_13804 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 97,621.90 Da | 38.52 | 104.42 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 635 | 855 | 2.27896E-119 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 318 | 612 | 2.81398E-83 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 11 | 211 | 1.36803E-109 | - |
| Pfam | PF00005 | ABC transporter | 29 | 163 | 4.1E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 654 | 802 | 1.1E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 320 | 560 | 8.5E-32 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 8 | 233 | 2.86E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 318 | 617 | 1.44E-46 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 629 | 866 | 9.15E-66 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 279 | 619 | 3.5E-53 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 3 | 255 | 1.0E-72 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 620 | 873 | 1.3E-78 | IPR027417 |
| SMART | SM00382 | AAA_5 | 663 | 848 | 1.3E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 38 | 211 | 5.3E-16 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 11 | 234 | 22.055599 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 320 | 584 | 32.517742 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 639 | 871 | 18.547546 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 136 | 150 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 266 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021736749.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology