Basic Information
Locus ID:
gene_13803
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 6696845 | 6703069 | - | gene_13803 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 166,756.55 Da | 35.81 | 108.87 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 309 | 596 | 6.1917E-86 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 928 | 1222 | 2.20686E-83 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 622 | 822 | 2.31693E-108 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1245 | 1465 | 5.02577E-120 | - |
| Pfam | PF00005 | ABC transporter | 640 | 774 | 2.0E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1264 | 1412 | 5.2E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 930 | 1172 | 2.5E-32 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 307 | 575 | 4.7E-21 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 928 | 1227 | 3.01E-46 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 306 | 603 | 3.66E-22 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1239 | 1476 | 2.81E-67 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 618 | 844 | 1.38E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 607 | 865 | 1.3E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1230 | 1483 | 6.0E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 294 | 604 | 1.5E-38 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 890 | 1229 | 1.3E-54 | IPR036640 |
| SMART | SM00382 | AAA_5 | 649 | 822 | 4.0E-16 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1273 | 1458 | 3.7E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 930 | 1210 | 32.603306 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1249 | 1481 | 18.98772 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 622 | 845 | 22.282356 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 308 | 588 | 27.03981 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 747 | 761 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 890 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021859153.1 | ABC transporter C family member 3-like isoform X1 [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology