Basic Information
Locus ID:
gene_13763
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 5976581 | 5981404 | - | gene_13763 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 48,340.60 Da | 49.96 | 92.60 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 150 | 190 | 1.72579E-8 | - |
| Pfam | PF12678 | RING-H2 zinc finger domain | 131 | 190 | 2.7E-8 | IPR024766 |
| Pfam | PF12678 | RING-H2 zinc finger domain | 354 | 408 | 2.2E-9 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 339 | 413 | 3.03E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 119 | 196 | 3.77E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 325 | 414 | 4.5E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 194 | 2.1E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 355 | 407 | 7.5E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 354 | 408 | 0.0091 | IPR011016 |
| SMART | SM00184 | ring_2 | 132 | 189 | 9.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 132 | 190 | 11.412309 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 355 | 408 | 11.692616 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051180591.1 | uncharacterized protein LOC127294751 [Lolium perenne] | 0 |
| TrEMBL | A0A3B6HTB8 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 12 | gene_13763, gene_13765, gene_17629, gene_17723, gene_17724 ... |