Basic Information
Locus ID:
gene_13683
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 4747298 | 4752471 | - | gene_13683 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.13 | 19,707.72 Da | 40.41 | 76.23 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 1 | 134 | 1.79372E-52 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 4 | 133 | 7.7E-40 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 141 | 5.37E-45 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 152 | 2.9E-48 | IPR016135 |
| SMART | SM00212 | ubc_7 | 1 | 139 | 2.4E-46 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 139 | 44.07674 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 64 | 80 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 163 | - | - |
| Coils | Coil | Coil | 123 | 143 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41340.1 | ubiquitin conjugating enzyme 4. Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated. | 0 |
| RefSeq | XP_021848483.1 | ubiquitin-conjugating enzyme E2-23 kDa-like [Spinacia oleracea] | 0 |
| P42748 | Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QIW6 | UBC core domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_174190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology