Basic Information
Locus ID:
gene_13680
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 4726589 | 4735818 | - | gene_13680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.87 | 71,489.34 Da | 42.56 | 84.65 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 389 | 432 | 1.18547E-19 | - |
| CDD | cd02241 | cupin_OxOx | 28 | 226 | 5.27373E-91 | - |
| Pfam | PF13639 | Ring finger domain | 389 | 432 | 5.8E-12 | IPR001841 |
| Pfam | PF00190 | Cupin | 69 | 218 | 3.1E-43 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 28 | 225 | 1.09E-43 | IPR011051 |
| SUPERFAMILY | SSF57850 | RING/U-box | 369 | 437 | 1.09E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 365 | 438 | 2.4E-20 | IPR013083 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 27 | 229 | 2.8E-80 | IPR014710 |
| SMART | SM00184 | ring_2 | 390 | 431 | 1.6E-6 | IPR001841 |
| SMART | SM00835 | Cupin_1_3 | 67 | 220 | 2.9E-34 | IPR006045 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 390 | 432 | 12.135206 | IPR001841 |
| ProSitePatterns | PS00725 | Germin family signature. | 110 | 123 | - | IPR019780 |
| PRINTS | PR00325 | Germin signature | 183 | 198 | 1.1E-23 | IPR001929 |
| PRINTS | PR00325 | Germin signature | 115 | 135 | 1.1E-23 | IPR001929 |
| PRINTS | PR00325 | Germin signature | 150 | 170 | 1.1E-23 | IPR001929 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 519 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 489 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010678730.2 | RING-H2 finger protein ATL47 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9DHN5 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology