Basic Information
Locus ID:
gene_13679
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 4718463 | 4724516 | - | gene_13679 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 127,207.82 Da | 40.31 | 87.71 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05183 | RNA dependent RNA polymerase | 381 | 956 | 2.5E-177 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 6 | 96 | 2.66E-8 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 107 | 3.0E-6 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 11 | 94 | 9.626806 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_010678731.2 | RNA-dependent RNA polymerase 2 [Beta vulgaris subsp. vulgaris] | 0 |
| O82504 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RCQ7 | RNA-dependent RNA polymerase OS=Spinacia oleracea OX=3562 GN=SOVF_081360 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology