Basic Information
Locus ID:
gene_13663
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 4459732 | 4469804 | - | gene_13663 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 77,077.05 Da | 46.37 | 90.01 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 548 | 592 | 3.59869E-20 | - |
| Pfam | PF00300 | Histidine phosphatase superfamily (branch 1) | 88 | 282 | 6.8E-13 | IPR013078 |
| Pfam | PF13639 | Ring finger domain | 548 | 590 | 1.8E-13 | IPR001841 |
| SUPERFAMILY | SSF53254 | Phosphoglycerate mutase-like | 78 | 282 | 4.07E-17 | IPR029033 |
| SUPERFAMILY | SSF57850 | RING/U-box | 531 | 598 | 1.74E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 517 | 595 | 4.1E-19 | IPR013083 |
| Gene3D | G3DSA:3.40.50.1240 | - | 81 | 291 | 1.6E-16 | IPR029033 |
| SMART | SM00184 | ring_2 | 549 | 589 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 549 | 590 | 12.917115 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47990.1 | SUGAR-INSENSITIVE 3. | 0 |
| RefSeq | XP_021718948.1 | E3 ubiquitin-protein ligase SIS3-like [Chenopodium quinoa] | 0 |
| Q8GYT9 | E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana OX=3702 GN=SIS3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RRC1 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_019105 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13050, jg18741, jg18742, jg25850 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13663 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021560 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g116970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30515, Sbi_jg58730 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28599 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55240, Sgl60500 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006380, gene:ENSEOMG00000021897 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0024320 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30139080 |
| Apiaceae | Apium graveolens | 2 | Ag10G00172, Ag3G00721 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G009850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701980 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.615.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G09600, Ftri2G07990, Ftri9G34091 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G47990.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10010583m.g.v1.0, Thhalv10010884m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g25980.v2.2, Sp5g13990.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g000080.2N, BniB05g052440.2N, BniB06g024170.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1917 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2097 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g04900 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g23110 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.769 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G26151, Lb5G26796 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.1945, BH02.2001, BH05.3048, CH02.2158 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0409030 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0000050.1, HORVU.MOREX.r3.1HG0015120.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_008371, gene-QYE76_017078, gene-QYE76_037703 |
| Poaceae | Oryza coarctata | 2 | Oco09G002170, Oco10G002170 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g05280.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G169200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0501244 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G018000, Chr18G003320, Chr22G017230 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G003200 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG000550 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G002000.1, TraesCS1B02G000900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb162790_P001, Zm00001eb341990_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48829 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26229 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.927, evm.TU.LG09.1042 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g18820 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1011, evm.TU.Scaffold_4_RagTag.479 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14691, nbisL1-mrna-28882 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11821, nbisL1-mrna-13639 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12574 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.115, evm.TU.utg000010l.105 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008844 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14597, nbisL1-mrna-752 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1469, nbisL1-mrna-8649 |
| Salicaceae | Populus euphratica | 2 | populus_peu28624, populus_peu30081 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132601339, gene-LOC132632782 |
| Solanaceae | Solanum chilense | 2 | SOLCI004193400, SOLCI006623500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012192, gene-LOC107023663 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11222 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2425 |
| Zosteraceae | Zostera marina | 1 | Zosma05g26050.v3.1 |