Basic Information
Locus ID:
gene_13573
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 2866192 | 2869481 | - | gene_13573 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 105,259.65 Da | 35.76 | 105.61 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 681 | 943 | 4.9E-36 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 518 | 577 | 4.4E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 72 | 2.4E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 319 | 603 | 2.3E-59 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 81 | 426 | 9.42E-56 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 680 | 945 | 6.07E-62 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 311 | 616 | 2.6E-90 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 151 | 238 | 4.4E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 239 | 310 | 6.1E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 34 | 150 | 4.5E-32 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 739 | 957 | 5.2E-61 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 672 | 737 | 3.3E-8 | - |
| SMART | SM00220 | serkin_6 | 673 | 947 | 2.8E-13 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 147 | 170 | 410.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 99 | 123 | 54.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 564 | 589 | 91.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 516 | 540 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 394 | 418 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 195 | 219 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 171 | 194 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 443 | 467 | 13.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 639 | 954 | 30.831213 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 790 | 802 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 446 | 459 | 6.9E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 564 | 577 | 6.9E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47090.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017614175.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Gossypium arboreum] | 0 |
| Q2R2D5 | Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. japonica OX=39947 GN=XA21 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P4MTE9 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 OS=Gossypium arboreum OX=29729 GN=LOC108459331 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13573 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1065, evm.TU.LG09.907 |