Basic Information
Locus ID:
gene_13568
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 2804848 | 2818991 | - | gene_13568 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 178,128.69 Da | 51.37 | 65.38 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 970 | 1009 | 2.44088E-16 | - |
| Pfam | PF02178 | AT hook motif | 397 | 407 | 0.62 | IPR017956 |
| Pfam | PF16135 | Tify domain binding domain | 892 | 941 | 2.4E-18 | IPR032308 |
| Pfam | PF02178 | AT hook motif | 483 | 491 | 9.3 | IPR017956 |
| Pfam | PF02178 | AT hook motif | 438 | 448 | 0.51 | IPR017956 |
| Pfam | PF02178 | AT hook motif | 564 | 573 | 0.74 | IPR017956 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 960 | 1016 | 4.65E-12 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1160 | 1244 | 3.74E-5 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 960 | 1033 | 3.2E-16 | IPR013083 |
| SMART | SM00384 | AT_hook_2 | 564 | 576 | 0.96 | IPR017956 |
| SMART | SM00249 | PHD_3 | 969 | 1010 | 8.4E-9 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 483 | 495 | 11.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 438 | 450 | 1.1 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 397 | 409 | 2.2 | IPR017956 |
| SMART | SM00249 | PHD_3 | 1013 | 1071 | 3.8 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 514 | 526 | 220.0 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 967 | 1012 | 9.890499 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 970 | 1009 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 608 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 655 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 790 | 813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 784 | 833 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1560 | 1580 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 830 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 370 | - | - |
| Coils | Coil | Coil | 675 | 695 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05380.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_010679053.2 | uncharacterized protein LOC104894503 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MS48 | PHD-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology