Basic Information
Locus ID:
gene_13305
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Zinc finger A20 and AN1 domain-containing stress-associated protein 6-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 37118974 | 37120483 | + | gene_13305 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 13,371.52 Da | 33.72 | 60.88 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01754 | A20-like zinc finger | 12 | 35 | 5.4E-13 | IPR002653 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 13 | 44 | 2.71E-13 | - |
| Gene3D | G3DSA:1.20.5.4770 | - | 1 | 61 | 2.8E-21 | - |
| SMART | SM00259 | A20_3 | 11 | 35 | 1.4E-9 | IPR002653 |
| ProSiteProfiles | PS51036 | Zinc finger A20-type profile. | 8 | 42 | 10.697047 | IPR002653 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 98 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27580.1 | A20/AN1-like zinc finger family protein. | 0 |
| RefSeq | XP_031387023.1 | zinc finger A20 and AN1 domain-containing stress-associated protein 9-like [Punica granatum] | 0 |
| Q6H754 | Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZX09 | Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13305 |
| Zosteraceae | Zostera marina | 5 | Zosma05g16690.v3.1, Zosma05g16700.v3.1, Zosma05g16720.v3.1 ... |