Basic Information
Locus ID:
gene_13268
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
twin BRCT domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 36477927 | 36484581 | + | gene_13268 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 59,654.40 Da | 61.42 | 68.59 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 377 | 421 | 1.4E-10 | IPR018957 |
| Pfam | PF12738 | twin BRCT domain | 43 | 105 | 4.1E-19 | IPR001357 |
| SUPERFAMILY | SSF57850 | RING/U-box | 369 | 430 | 4.2E-15 | - |
| SUPERFAMILY | SSF52113 | BRCT domain | 39 | 123 | 1.32E-21 | IPR036420 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 473 | 523 | 8.4E-6 | IPR011011 |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 34 | 122 | 8.9E-23 | IPR036420 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 371 | 442 | 5.5E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 377 | 421 | 5.3E-9 | IPR001841 |
| SMART | SM00292 | BRCT_7 | 34 | 113 | 3.0E-11 | IPR001357 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 32 | 123 | 16.928381 | IPR001357 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 377 | 422 | 13.713777 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 393 | 402 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 305 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67180.1 | zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein. | 0 |
| RefSeq | XP_021864693.1 | uncharacterized protein LOC110803482 [Spinacia oleracea] | 0 |
| O04251 | BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana OX=3702 GN=At4g02110 PE=4 SV=3 | 0 | |
| TrEMBL | A0A7C9AZA6 | BRCT domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17521 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13268 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034857 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g031340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21060, Sbi_jg22737 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16612 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018274 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl62408, Sgl62409, Sgl66956, Sgl66958 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016789, gene:ENSEOMG00000020082 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0021980, CQ.Regalona.r1.2AG0023790 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30192040 |
| Apiaceae | Apium graveolens | 1 | AgUnG00299 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G008960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701730 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2287.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G19550 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G67180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018524m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g22110.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g063170.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0797 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0806 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0208s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g26530 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.401, evm.TU.LG12.489 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024086 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11242 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1475, BH08.1496, CH08.1632 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0004160.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032005 |
| Poaceae | Oryza coarctata | 2 | Oco15G008170, Oco16G007850 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g31930.1, LOC_Os12g14840.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G132300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403226 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G013950, Chr17G013380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G058200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG002630, gene_TRIDC1BG003490 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G025700.1, TraesCS1B02G032600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb042310_P002, Zm00001eb178960_P005 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG15.342 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g15330 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1648 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1950, nbisL1-mrna-2097 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18315 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2854 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.239 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001827 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5338 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13014 |
| Salicaceae | Populus euphratica | 1 | populus_peu09480 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132615354, gene-LOC132623345, gene-LOC132628649 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009390 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17293 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0053 |
| Zosteraceae | Zostera marina | 1 | Zosma03g16770.v3.1 |