Basic Information
Locus ID:
gene_1322
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 38046011 | 38051341 | - | gene_1322 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 55,680.58 Da | 53.15 | 97.87 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 79 | 113 | 7.5E-5 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 239 | 454 | 2.39E-30 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 189 | 258 | 1.8E-6 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 77 | 133 | 9.81E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 375 | 468 | 3.3E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 78 | 374 | 2.7E-27 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 406 | 431 | 16.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 279 | 303 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 355 | 383 | 360.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 247 | 278 | 76.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51380.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_010692147.1 | F-box protein At5g51380 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FGN3 | F-box protein At5g51380 OS=Arabidopsis thaliana OX=3702 GN=At5g51380 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LI98 | F-box protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg14116, jg1797, jg26799, jg34039 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1322, gene_6065 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023257 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29228, Sbi_jg3467 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6499 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000221 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11350, Sgl16735 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012938, gene:ENSEOMG00000034537 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0006870, CQ.Regalona.r1.2BG0022810 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30002370, pistato.v30110810, pistato.v30180640 ... |
| Apiaceae | Apium graveolens | 3 | Ag10G00294, Ag10G02685, Ag2G01926 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G005700, COCNU_07G005710 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711681, gene-LOC113463022 |
| Asteraceae | Flaveria trinervia | 4 | Ftri15G23006, Ftri18G34030, Ftri3G27578, Ftri9G05825 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT5G07670.1, AT5G51370.2, AT5G51380.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10013410m.g.v1.0, Thhalv10013413m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g13550.v2.2, Sp6g35230.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g028740.2N, BniB02g053320.2N, BniB05g028270.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G1116, Ceq08G0218 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1135, Cgl08G0170 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g02410, gene.Cymno18g03980 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04850 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6088 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2368, evm.TU.LG04.132 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00032260, Pov_00040781 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02142, Lb1G02162 |
| Poaceae | Echinochloa crus-galli | 2 | AH07.2878, CH07.2766 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0139820, gene-QOZ80_2BG0195480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0601060.2 |
| Poaceae | Oryza coarctata | 1 | Oco04G018010 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g44104.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G219200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203940, Pt_Chr0204009 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G005810, Chr09G024260, Chr10G004730, Chr17G013760 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G467800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG038470, gene_TRIDC6BG045370 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G249800.1, TraesCS6B02G275600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb249570_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9262 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14054 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.973, evm.TU.LG19.740, evm.TU.LG24.730 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g04470 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.223, evm.TU.Scaffold_8_RagTag.1527 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-29124, nbisL1-mrna-8320, nbisL1-mrna-8397 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20246, nbisL1-mrna-6851 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15156, nbisL1-mrna-2073 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.138, evm.TU.utg000018l.108 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000213, Maker00003325 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2413, nbisL1-mrna-9451 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22752, nbisL1-mrna-6190 |
| Salicaceae | Populus euphratica | 3 | populus_peu03348, populus_peu31824, populus_peu34195 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631702, gene-LOC132645751 |
| Solanaceae | Solanum chilense | 2 | SOLCI004987200, SOLCI006564200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007836, gene-LOC107012789 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9943_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2610, TC09G2045 |
| Zosteraceae | Zostera marina | 2 | Zosma06g03780.v3.1, Zosma06g03790.v3.1 |