Basic Information
Locus ID:
gene_13214
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 35349286 | 35356812 | + | gene_13214 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 110,957.88 Da | 30.39 | 90.33 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 675 | 950 | 2.73551E-94 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 434 | 457 | 0.016 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 115 | 150 | 3.7E-5 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 177 | 235 | 6.3E-7 | IPR001611 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 482 | 525 | 2.1E-8 | IPR025875 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 672 | 946 | 6.2E-46 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 644 | 957 | 1.97E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 132 | 527 | 1.21E-46 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 747 | 963 | 6.6E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 420 | 542 | 6.4E-31 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 634 | 746 | 3.6E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 114 | 417 | 8.3E-79 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 274 | 297 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 481 | 504 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 505 | 527 | 89.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 669 | 951 | 9.0E-44 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 176 | 198 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 223 | 247 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 199 | 222 | 2.7E-4 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 483 | 506 | 7.1113 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 201 | 222 | 7.788962 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 178 | 200 | 7.457832 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 669 | 951 | 40.145519 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 794 | 806 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 675 | 697 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 994 | 1023 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 562 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_021847754.1 | receptor protein kinase TMK1-like [Spinacia oleracea] | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9FAG2 | Receptor protein serine/threonine kinase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology