Basic Information
Locus ID:
gene_13210
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 35222154 | 35235187 | + | gene_13210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 88,920.18 Da | 51.72 | 76.20 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 65 | 216 | 2.04195E-25 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 92 | 171 | 8.5E-9 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 428 | 502 | 7.5E-7 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 22 | 366 | 6.8E-109 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 369 | 426 | 9.8E-11 | IPR007010 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 18 | 215 | 8.18E-51 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 369 | 495 | 4.12E-36 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 217 | 366 | 3.14E-64 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 369 | 484 | 1.5E-26 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 54 | 210 | 3.8E-155 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 22 | 364 | 3.8E-155 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 789 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_010668742.1 | nuclear poly(A) polymerase 4 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N4A6 | polynucleotide adenylyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology