Basic Information
Locus ID:
gene_13204
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 35135018 | 35142868 | + | gene_13204 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 190,574.39 Da | 41.48 | 98.15 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1390 | 1672 | 2.31113E-87 | - |
| Pfam | PF13855 | Leucine rich repeat | 97 | 156 | 7.7E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1224 | 1282 | 1.4E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 1386 | 1669 | 8.3E-47 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 218 | 240 | 0.092 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1079 | 1138 | 2.8E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 693 | 975 | 1.2E-43 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 56 | 372 | 4.76E-59 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 337 | 628 | 2.72E-40 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1373 | 1673 | 3.1E-70 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 1007 | 1314 | 3.4E-57 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 670 | 978 | 3.24E-70 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 675 | 770 | 8.3E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 34 | 206 | 7.6E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 337 | 624 | 2.2E-70 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 771 | 1003 | 2.5E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1369 | 1462 | 3.1E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 207 | 336 | 1.5E-37 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1004 | 1326 | 1.2E-80 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1463 | 1696 | 9.2E-60 | - |
| SMART | SM00365 | LRR_sd22_2 | 264 | 290 | 47.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1199 | 1225 | 18.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 216 | 242 | 170.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1053 | 1079 | 560.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 95 | 121 | 91.0 | - |
| SMART | SM00220 | serkin_6 | 1384 | 1673 | 2.3E-24 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 311 | 335 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1126 | 1150 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1053 | 1077 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 501 | 525 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1224 | 1245 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1200 | 1223 | 64.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1175 | 1199 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 549 | 573 | 31.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 691 | 977 | 2.7E-24 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 167 | 191 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1246 | 1270 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 240 | 264 | 22.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 691 | 985 | 36.089062 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1384 | 1673 | 35.142082 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 574 | 596 | 7.041994 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1201 | 1223 | 7.026593 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 828 | 840 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1522 | 1534 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1678 | 1702 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_021847707.1 | receptor-like protein kinase HSL1 [Spinacia oleracea] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4S4F0U8 | Protein kinase domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_000561 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology