Basic Information
Locus ID:
gene_13201
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 35111160 | 35113663 | + | gene_13201 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 82,554.31 Da | 42.03 | 92.08 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 418 | 701 | 1.7303E-90 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 181 | 203 | 1.2 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 205 | 263 | 9.7E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 38 | 94 | 8.8E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 108 | 166 | 9.3E-10 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 414 | 698 | 3.0E-44 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 12 | 336 | 8.5E-58 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 393 | 701 | 8.9E-70 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 492 | 725 | 1.9E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 176 | 358 | 6.3E-44 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 108 | 175 | 1.7E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 107 | 1.7E-28 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 396 | 491 | 3.9E-19 | - |
| SMART | SM00220 | serkin_6 | 412 | 702 | 3.2E-22 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 154 | 178 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 274 | 298 | 51.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 203 | 227 | 1.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 57 | 85 | 53.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 205 | 227 | 7.011191 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 412 | 728 | 35.014877 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 551 | 563 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 726 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_010669046.2 | receptor-like protein kinase HSL1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q6L8 | Protein kinase domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_216500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology