Basic Information
Locus ID:
gene_13154
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
CERK1
Description:
chitin elicitor receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 34227543 | 34235727 | + | gene_13154 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 66,410.19 Da | 36.54 | 91.65 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 316 | 581 | 3.45459E-87 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 312 | 577 | 4.8E-48 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 292 | 578 | 4.32E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 381 | 595 | 1.3E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 284 | 380 | 3.7E-27 | - |
| SMART | SM00220 | serkin_6 | 310 | 582 | 1.3E-36 | IPR000719 |
| SMART | SM00257 | LysM_2 | 94 | 140 | 0.55 | IPR018392 |
| SMART | SM00257 | LysM_2 | 33 | 78 | 0.25 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 310 | 599 | 39.368149 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 316 | 338 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 425 | 437 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21630.1 | chitin elicitor receptor kinase 1. LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane. | 0 |
| RefSeq | XP_048495064.1 | chitin elicitor receptor kinase 1 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6UD73 | LysM domain receptor-like kinase 3 OS=Medicago truncatula OX=3880 GN=LYK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R6T4 | LysM domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_100180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology