Basic Information
Locus ID:
gene_13152
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 34200666 | 34209885 | + | gene_13152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 104,659.77 Da | 58.79 | 75.50 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 14 | 150 | 1.5923E-53 | - |
| Pfam | PF00069 | Protein kinase domain | 433 | 685 | 1.5E-42 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 412 | 687 | 9.17E-69 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 17 | 148 | 5.36E-7 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 15 | 150 | 3.8E-7 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 503 | 709 | 1.5E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 400 | 502 | 9.4E-25 | - |
| SMART | SM00220 | serkin_6 | 430 | 694 | 2.6E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 430 | 694 | 34.98661 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 548 | 560 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 861 | 883 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 778 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 861 | 902 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 240 | - | - |
| Coils | Coil | Coil | 363 | 411 | - | - |
| Coils | Coil | Coil | 328 | 348 | - | - |
| Coils | Coil | Coil | 296 | 316 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12000.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_021763737.1 | U-box domain-containing protein 52-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N1Z3 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology