Basic Information
Locus ID:
gene_13123
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 33654017 | 33664068 | + | gene_13123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 111,427.41 Da | 47.84 | 99.03 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 226 | 266 | 1.9E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 226 | 257 | 7.85E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 249 | 514 | 2.75E-30 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 707 | 1013 | 1.38E-25 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 574 | 805 | 3.34E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 266 | 546 | 7.2E-19 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 218 | 265 | 1.3E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 673 | 780 | 6.0E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 781 | 859 | 2.4E-7 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 549 | 672 | 1.7E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 860 | 1013 | 1.3E-7 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 954 | 978 | 62.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 539 | 564 | 51.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 227 | 267 | 1.1E-6 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 609 | 636 | 17.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 425 | 450 | 3.8E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 472 | 497 | 5.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 451 | 471 | 560.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 581 | 606 | 17.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 841 | 868 | 280.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 651 | 681 | 440.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 740 | 765 | 36.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 788 | 813 | 520.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 979 | 1005 | 420.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 714 | 739 | 58.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 399 | 424 | 0.51 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| Coils | Coil | Coil | 5 | 32 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33210.1 | F-box family protein. Encodes SLOMO (SLOW MOTION), a F-box protein required for auxin homeostasis and normal timing of lateral organ initiation at the shoot meristem. | 0 |
| RefSeq | XP_021744375.1 | F-box/LRR-repeat protein 15-like [Chenopodium quinoa] | 0 |
| Q9SMY8 | F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana OX=3702 GN=FBL15 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LB41 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23985, jg7948 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13123 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034449 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033880 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20404, Sbi_jg23382 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17160 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009067 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63604, Sgl68094 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018783, gene:ENSEOMG00000020873 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013590, CQ.Regalona.r1.2BG0015670 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30260920 |
| Apiaceae | Apium graveolens | 2 | Ag7G00415, Ag9G02579 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G008750 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712630 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1206.V1.1, AsparagusV1_07.3634.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G03550 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G33210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024312m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g30950.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g086200.2N, BniB03g009580.2N, BniB03g009590.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2146 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2288 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g10160 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g25650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.688 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013382 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G38195, Lb0G38200, Lb4G24789, Lb4G25728 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2324, BH01.55, CH01.2595 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0123330, gene-QOZ80_2BG0178610 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0037610.1 |
| Poaceae | Oryza coarctata | 1 | Oco19G003630 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g25680.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_K228700, gene-BS78_K229100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502397 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G014600, Chr09G008540, Chr13G016430 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G249600 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG024720 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G136200.1, TraesCS1B02G154100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb048660_P002, Zm00001eb223490_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27842, nbis-gene-46710 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13175, Zma_g15997 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG07.851, evm.TU.LG15.83, evm.TU.LG22.1514 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g04360 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.658 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13830, nbisL1-mrna-25865 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16187, nbisL1-mrna-19273 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1334, nbisL1-mrna-8912 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.703, evm.TU.utg000033l.470 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000390, Maker00014941 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2055, nbisL1-mrna-3918 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-8051, nbisL1-mrna-9408 |
| Salicaceae | Populus euphratica | 3 | populus_peu04955, populus_peu12579, populus_peu22388 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635981 |
| Solanaceae | Solanum chilense | 1 | SOLCI005901900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028506 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13365, gene_18044 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1484 |
| Zosteraceae | Zostera marina | 1 | Zosma03g25640.v3.1 |