Basic Information
Locus ID:
gene_13102
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 124788652 | 124796423 | - | gene_13102 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 81,278.50 Da | 38.10 | 92.54 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 358 | 656 | 2.50212E-150 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 42 | 341 | 3.41383E-160 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 47 | 336 | 4.0E-6 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 363 | 652 | 6.2E-28 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 358 | 657 | 3.4E-43 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 41 | 340 | 7.06E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 41 | 340 | 2.4E-37 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 356 | 656 | 1.0E-45 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 42 | 342 | 34.329411 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 358 | 657 | 35.376904 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_021834926.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Spinacia oleracea] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5B6Z7R8 | glycerophosphodiester phosphodiesterase OS=Davidia involucrata OX=16924 GN=Din_008554 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology