Basic Information
Locus ID:
gene_1309
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
HUB1
Description:
E3 ubiquitin-protein ligase BRE1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 37844521 | 37871296 | - | gene_1309 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 110,790.49 Da | 55.80 | 83.99 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16499 | RING-HC_BRE1_like | 826 | 865 | 2.5589E-16 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 828 | 864 | 1.1E-7 | IPR018957 |
| Pfam | PF09446 | VMA21-like domain | 874 | 937 | 8.8E-19 | IPR019013 |
| SUPERFAMILY | SSF57850 | RING/U-box | 820 | 885 | 8.94E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 812 | 880 | 1.5E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 828 | 866 | 2.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 828 | 864 | 10.261575 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 843 | 852 | - | IPR017907 |
| Hamap | MF_03058 | Vacuolar ATPase assembly integral membrane protein <gene_name> [VMA21]. | 872 | 958 | 20.285503 | IPR019013 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| Coils | Coil | Coil | 327 | 347 | - | - |
| Coils | Coil | Coil | 779 | 806 | - | - |
| Coils | Coil | Coil | 245 | 282 | - | - |
| Coils | Coil | Coil | 49 | 76 | - | - |
| Coils | Coil | Coil | 206 | 233 | - | - |
| Coils | Coil | Coil | 744 | 764 | - | - |
| Coils | Coil | Coil | 639 | 659 | - | - |
| Coils | Coil | Coil | 583 | 624 | - | - |
| Coils | Coil | Coil | 491 | 511 | - | - |
| Coils | Coil | Coil | 419 | 446 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44950.1 | histone mono-ubiquitination 1. The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. | 0 |
| RefSeq | XP_010692108.1 | E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8RXD6 | E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana OX=3702 GN=HUB1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R8Q6 | E3 ubiquitin protein ligase OS=Spinacia oleracea OX=3562 GN=SOVF_098820 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29195 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1309 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023277 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29201, Sbi_jg3434 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6526 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000200 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11377, Sgl16757 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000013194, gene:ENSEOMG00000013313 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0006940, CQ.Regalona.r1.2BG0022570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30002150 |
| Apiaceae | Apium graveolens | 1 | Ag10G00305 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G005340, scaffold008284G000050 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103711663, gene-LOC103717272, gene-LOC120110804 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3293.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G24382 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G44950.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001306m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27030.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g001750.2N, BniB06g003390.2N, BniB06g003410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1093 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1113 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g15520, gene.Cymno02g15530 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g16040 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.110 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014973 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28107 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2546, BH06.2350, CH06.2568 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0321460, gene-QOZ80_4BG0357190 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0301020.1, HORVU.MOREX.r3.6HG0600810.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_024160 |
| Poaceae | Oryza coarctata | 2 | Oco07G012360, Oco08G012070 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g46450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G249500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203948, Pt_Chr0204019 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G015400, Chr26G004430, Chr30G012380 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G587800, Tel6E01G469100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG053120, gene_TRIDC3BG059760 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G369300.2, TraesCS3B02G401200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb226640_P005, Zm00001eb273100_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44976 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19513 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG19.721, evm.TU.LG19.722, evm.TU.LG24.709 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1512 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-8330, nbisL1-mrna-8409 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18385, nbisL1-mrna-2684 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-15166, nbisL1-mrna-15168, nbisL1-mrna-15169 ... |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.119, evm.TU.utg000028l.132 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003594 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-8094, nbisL1-mrna-9461 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22765, nbisL1-mrna-9778 |
| Salicaceae | Populus euphratica | 2 | populus_peu31840, populus_peu31841 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627063 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004748 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15743, gene_855 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2587 |
| Zosteraceae | Zostera marina | 1 | Zosma06g20670.v3.1 |