Basic Information
Locus ID:
gene_13011
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Myosin-like coiled-coil protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 31454292 | 31488959 | + | gene_13011 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 57,265.70 Da | 49.50 | 79.88 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09728 | Myosin-like coiled-coil protein | 213 | 486 | 2.0E-67 | IPR026183 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 226 | - | - |
| Coils | Coil | Coil | 452 | 493 | - | - |
| Coils | Coil | Coil | 417 | 437 | - | - |
| Coils | Coil | Coil | 251 | 285 | - | - |
| Coils | Coil | Coil | 340 | 381 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50840.1 | 0 | |
| RefSeq | XP_021864393.1 | beta-taxilin isoform X2 [Spinacia oleracea] | 0 |
| P40222 | Alpha-taxilin OS=Homo sapiens OX=9606 GN=TXLNA PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9QQN1 | Alpha-taxilin OS=Spinacia oleracea OX=3562 GN=SOVF_159170 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2754 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13011 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah034029, Ah034031 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g036230 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20718, Sbi_jg23037 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16910 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00009268, GOSA_00009269 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl62081, Sgl62094, Sgl63954, Sgl66641, Sgl66645, Sgl68444 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018403, gene:ENSEOMG00000022668 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0012100, CQ.Regalona.r1.2BG0013570 |
| Apiaceae | Apium graveolens | 1 | Ag7G01256 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G014290, COCNU_12G006750, COCNU_16G006780 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103706666, gene-LOC103709830, gene-LOC113463458 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.989.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G03920 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G50840.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013687m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g12980.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g060480.2N, BniB08g018380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0642 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0654 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g15650 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.1005s00002.v1.0, Dusal.1005s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g32770 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1421 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012698 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12480, Lb6G30463 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244090, gene-QOZ80_3BG0284050 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0385190.1, HORVU.MOREX.r3.4HG0385200.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_008329, gene-QYE76_068776 |
| Poaceae | Oryza coarctata | 2 | Oco05G010490, Oco06G010710 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g17930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G390900 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G031860, Chr04G008560, Chr07G003110, Chr12G007770 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G348300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG058220, gene_TRIDC4AG014890 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G402800.1, TraesCS4A02G108300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb013240_P002, Zm00001eb397090_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-1977, nbis-gene-3636 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1457, Zma_g3850 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.849, evm.TU.LG05.2089, evm.TU.LG07.120 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1644 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-31679 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9130 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4457 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.906 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000293 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2145 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9532 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616179 |
| Solanaceae | Solanum chilense | 1 | SOLCI006800000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015538 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32594_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1291 |
| Zosteraceae | Zostera marina | 1 | Zosma01g18540.v3.1 |