Basic Information
Locus ID:
gene_12995
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 30985867 | 30997865 | + | gene_12995 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.44 | 227,175.52 Da | 45.90 | 67.49 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 1487 | 1569 | 2.91954E-29 | - |
| Pfam | PF00855 | PWWP domain | 1483 | 1569 | 4.7E-17 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 1479 | 1604 | 4.51E-26 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 1474 | 1577 | 2.1E-25 | - |
| SMART | SM00293 | PWWP_4 | 1483 | 1544 | 6.8E-9 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 1485 | 1546 | 14.35871 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1692 | 1717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1125 | 1142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 906 | 922 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1822 | 1858 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1353 | 1376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1015 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1941 | 1958 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 992 | 1015 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1444 | 1458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 899 | 927 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1396 | 1466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1896 | 1974 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1410 | 1425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1355 | 1373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1125 | 1147 | - | - |
| Coils | Coil | Coil | 390 | 410 | - | - |
| Coils | Coil | Coil | 1409 | 1429 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_010672904.1 | uncharacterized protein LOC104889395 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MAI6 | PWWP domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology