Basic Information
Locus ID:
gene_12990
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 30833139 | 30835084 | + | gene_12990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 46,047.20 Da | 52.58 | 83.10 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 27 | 63 | 3.0E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 73 | 1.7E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 26 | 66 | 1.5E-5 | - |
| SMART | SM00256 | fbox_2 | 27 | 67 | 1.1E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 27 | 68 | 9.550458 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62660.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021856069.1 | F-box/kelch-repeat protein At3g23880-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9REL2 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_081370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 8 | gene_12609, gene_12987, gene_12988, gene_12990, gene_15701 ... |