Basic Information
Locus ID:
gene_12987
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Protein NRT1 PTR FAMILY
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 30801096 | 30809775 | + | gene_12987 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 76,807.07 Da | 45.86 | 94.70 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 223 | 321 | 1.2E-7 | IPR006527 |
| Pfam | PF00646 | F-box domain | 21 | 57 | 2.2E-9 | IPR001810 |
| Pfam | PF00854 | POT family | 403 | 621 | 9.3E-22 | IPR000109 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 92 | 1.09E-13 | IPR036047 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 441 | 653 | 1.06E-5 | IPR036259 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 89 | 9.2E-7 | - |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 373 | 667 | 2.6E-55 | IPR036259 |
| SMART | SM00256 | fbox_2 | 20 | 60 | 7.3E-11 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 116 | 315 | 2.3E-14 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 14 | 61 | 11.034144 | IPR001810 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45660.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021744336.1 | protein NRT1/ PTR FAMILY 2.6-like [Chenopodium quinoa] | 0 |
| Q9M1E1 | Protein NRT1/ PTR FAMILY 2.6 OS=Arabidopsis thaliana OX=3702 GN=NPF2.6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LZA0 | MFS domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 8 | gene_12609, gene_12987, gene_12988, gene_12990, gene_15701 ... |