Basic Information
Locus ID:
gene_12959
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Proteinaceous RNase P 1, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 30051146 | 30057740 | + | gene_12959 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 95,121.11 Da | 42.39 | 75.69 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03203 | GST_C_Lambda | 727 | 846 | 5.4223E-63 | - |
| Pfam | PF13410 | Glutathione S-transferase, C-terminal domain | 760 | 823 | 1.8E-6 | - |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 203 | 416 | 2.4E-73 | IPR033443 |
| Pfam | PF13409 | Glutathione S-transferase, N-terminal domain | 42 | 88 | 2.7E-7 | IPR004045 |
| Pfam | PF16953 | Protein-only RNase P | 457 | 683 | 1.3E-69 | IPR031595 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 26 | 75 | 1.66E-6 | IPR036249 |
| SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 718 | 849 | 4.15E-20 | IPR036282 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 210 | 686 | 3.6E-229 | IPR011990 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 6 | 101 | 4.1E-25 | - |
| Gene3D | G3DSA:3.40.50.11980 | - | 475 | 649 | 3.6E-229 | - |
| Gene3D | G3DSA:1.20.1050.10 | - | 720 | 853 | 8.0E-55 | - |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 334 | 362 | 0.0019 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 294 | 328 | 9.141782 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 194 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_010669732.2 | proteinaceous RNase P 1, chloroplastic/mitochondrial [Beta vulgaris subsp. vulgaris] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M9H1 | ribonuclease P OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology