Basic Information
Locus ID:
gene_12924
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 29141144 | 29143529 | + | gene_12924 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 77,648.92 Da | 43.55 | 95.52 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 140 | 162 | 1.6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 376 | 660 | 9.2E-46 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 18 | 78 | 2.6E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 2 | 277 | 6.12E-51 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 365 | 663 | 4.32E-72 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 129 | 312 | 2.3E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 128 | 1.2E-37 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 454 | 682 | 2.9E-61 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 358 | 453 | 2.2E-18 | - |
| SMART | SM00369 | LRR_typ_2 | 65 | 89 | 40.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 374 | 662 | 8.9E-28 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 113 | 137 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 40 | 64 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 162 | 186 | 7.5 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 374 | 670 | 36.301071 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 513 | 525 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 380 | 404 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_021739112.1 | receptor-like protein kinase HSL1 [Chenopodium quinoa] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9EK63 | Protein kinase domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology