Basic Information
Locus ID:
gene_12920
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box kelch-repeat protein At3g23880-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 29045863 | 29047679 | + | gene_12920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 54,433.69 Da | 42.25 | 81.42 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 1 | 37 | 7.5E-8 | IPR001810 |
| Pfam | PF07734 | F-box associated | 230 | 374 | 6.3E-5 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 53 | 2.88E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 36 | 5.4E-8 | - |
| SMART | SM00256 | fbox_2 | 1 | 41 | 2.2E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 105 | 365 | 9.9E-22 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 42 | 11.855471 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010268500.1 | PREDICTED: F-box protein CPR30-like [Nelumbo nucifera] | 0 |
| Q9FZF8 | Putative F-box protein At1g47790 OS=Arabidopsis thaliana OX=3702 GN=At1g47790 PE=4 SV=1 | 0 | |
| TrEMBL | A0A484KI55 | F-box domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS5370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_11648, gene_11649, gene_12920, gene_25916, gene_9757 |