Basic Information
Locus ID:
gene_12874
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 27356027 | 27357933 | + | gene_12874 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 50,289.92 Da | 38.27 | 94.84 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 12 | 54 | 4.5E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 57 | 9.55E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 63 | 2.3E-8 | - |
| SMART | SM00256 | fbox_2 | 11 | 51 | 4.1E-9 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 118 | 385 | 8.1E-16 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 52 | 12.14691 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_016678311.1 | F-box protein CPR1-like isoform X2 [Gossypium hirsutum] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9AYU5 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 15 | gene_12873, gene_12874, gene_18285, gene_18342, gene_18344 ... |