Basic Information
Locus ID:
gene_12873
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 27308898 | 27310242 | + | gene_12873 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 42,610.18 Da | 49.30 | 90.08 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 12 | 49 | 6.6E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 57 | 2.09E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 60 | 1.6E-8 | - |
| SMART | SM00256 | fbox_2 | 13 | 53 | 1.6E-9 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 54 | 12.464842 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 369 | - | - |
| Coils | Coil | Coil | 350 | 369 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038997848.1 | F-box protein CPR1-like isoform X2 [Hibiscus syriacus] | 0 |
| TrEMBL | A0A7C9AYU5 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 15 | gene_12873, gene_12874, gene_18285, gene_18342, gene_18344 ... |