Basic Information
Locus ID:
gene_12816
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 24735750 | 24759873 | + | gene_12816 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 110,691.21 Da | 33.32 | 88.45 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 694 | 958 | 7.57371E-95 | - |
| Pfam | PF00069 | Protein kinase domain | 691 | 954 | 4.9E-48 | IPR000719 |
| Pfam | PF11721 | Malectin domain | 425 | 609 | 5.3E-41 | IPR021720 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 672 | 976 | 2.56E-80 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 98 | 376 | 2.83E-52 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 279 | 402 | 7.4E-23 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 764 | 966 | 1.4E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 278 | 5.2E-48 | IPR032675 |
| Gene3D | G3DSA:2.60.120.430 | - | 424 | 613 | 3.5E-32 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 648 | 763 | 6.1E-35 | - |
| SMART | SM00220 | serkin_6 | 688 | 956 | 8.5E-37 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 314 | 336 | 7.057395 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 688 | 962 | 37.064308 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 808 | 820 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 988 | 1010 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56120.2 | - | 0 |
| RefSeq | XP_048504074.1 | probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Beta vulgaris subsp. vulgaris] | 0 |
| C0LGH3 | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana OX=3702 GN=At1g56140 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9R015 | Protein kinase domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_122240 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology