Basic Information
Locus ID:
gene_12813
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 24662574 | 24700813 | + | gene_12813 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 112,802.25 Da | 30.70 | 96.22 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 721 | 985 | 1.45952E-91 | - |
| Pfam | PF11721 | Malectin domain | 428 | 550 | 5.3E-21 | IPR021720 |
| Pfam | PF13855 | Leucine rich repeat | 293 | 352 | 2.8E-7 | IPR001611 |
| Pfam | PF11721 | Malectin domain | 572 | 636 | 5.4E-12 | IPR021720 |
| Pfam | PF00069 | Protein kinase domain | 716 | 980 | 4.9E-47 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 86 | 403 | 3.57E-49 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 699 | 999 | 4.37E-80 | IPR011009 |
| Gene3D | G3DSA:2.60.120.430 | - | 427 | 640 | 1.7E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 791 | 992 | 1.3E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 50 | 209 | 1.5E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 210 | 414 | 4.8E-42 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 687 | 790 | 1.1E-35 | - |
| SMART | SM00220 | serkin_6 | 715 | 983 | 4.6E-37 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 715 | 989 | 36.96537 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 835 | 847 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56120.2 | - | 0 |
| RefSeq | XP_048504074.1 | probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Beta vulgaris subsp. vulgaris] | 0 |
| C0LGH3 | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana OX=3702 GN=At1g56140 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9R015 | Protein kinase domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_122240 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology