Basic Information
Locus ID:
gene_12755
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Protein strawberry notch
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 21782325 | 21832069 | + | gene_12755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 141,319.08 Da | 52.44 | 85.18 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13872 | P-loop containing NTP hydrolase pore-1 | 198 | 498 | 2.6E-132 | IPR039187 |
| Pfam | PF00628 | PHD-finger | 678 | 725 | 4.9E-8 | IPR019787 |
| Pfam | PF13871 | C-terminal domain on Strawberry notch homologue | 766 | 1055 | 6.4E-109 | IPR026937 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 201 | 441 | 4.98E-15 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 821 | 926 | 5.31E-6 | IPR027417 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 665 | 727 | 2.08E-11 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 623 | 734 | 4.1E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 232 | 428 | 1.5E-8 | IPR027417 |
| SMART | SM00249 | PHD_3 | 678 | 723 | 1.8E-6 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 676 | 725 | 9.312 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 679 | 722 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 105 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79350.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010670017.2 | protein FORGETTER 1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IF36 | Protein FORGETTER 1 OS=Arabidopsis thaliana OX=3702 GN=FGT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RAC4 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_088760 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21731 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12755 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah033845, Ah033846 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19564, Sbi_jg44126 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17855 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024011 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl64809, Sgl69270 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000014338, gene:ENSEOMG00000017128 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0010250, CQ.Regalona.r1.2BG0010200 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30180190 |
| Apiaceae | Apium graveolens | 3 | Ag2G01403, Ag3G02070, Ag3G02071 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G007600, COCNU_04G007610 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708025 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.164.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G02445 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G79350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000653m.g.v1.0, Thhalv10018021m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g34410.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g067720.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1689, Ceq03G1697 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1815 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g02640 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0166s00008.v1.0, Dusal.0166s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g00300 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2989, evm.TU.LG01.2991 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039188 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00467, Lb1G00470 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.673, AH09.2249, CH08.799 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0304550, gene-QOZ80_4BG0335420 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0191950.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_033058, gene-QYE76_046228 |
| Poaceae | Oryza coarctata | 3 | Oco07G015590, Oco15G004280, Oco16G004030 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g52020.1, LOC_Os04g52030.1, LOC_Os08g12680.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G132500, gene-BS78_06G222700 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301328 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr20G010190, Chr25G003420, Chr29G009800, Chr30G003420 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G727900, Tel7E01G688100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG061670, gene_TRIDC2BG065490 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G428300.8, TraesCS2D02G426400.7 ... |
| Poaceae | Zea mays | 2 | Zm00001eb413950_P001, Zm00001eb430630_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5811 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g21945, Zma_g23784 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2501, evm.TU.LG06.1856, evm.TU.LG08.6 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g07950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.24 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10382 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4160 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10732 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.16 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013295 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9329 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6853 |
| Salicaceae | Populus euphratica | 2 | populus_peu06672, populus_peu20560 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627389 |
| Solanaceae | Solanum chilense | 1 | SOLCI003315200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002313 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5944 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3598 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20810.v3.1 |