Basic Information
Locus ID:
gene_1274
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 5586508 | 5588087 | - | gene_1274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 48,599.55 Da | 37.88 | 106.07 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 12 | 58 | 2.54279E-20 | - |
| Pfam | PF04564 | U-box domain | 8 | 88 | 3.6E-16 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 110 | 396 | 2.37E-9 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 2 | 88 | 1.06E-24 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 211 | 431 | 1.3E-7 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 94 | 2.2E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 11 | 86 | 3.1E-24 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 7 | 93 | 29.148348 | IPR003613 |
| Coils | Coil | Coil | 439 | 440 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_028056709.1 | E3 ubiquitin-protein ligase PUB23-like [Camellia sinensis] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7BYP4 | RING-type E3 ubiquitin transferase OS=Davidia involucrata OX=16924 GN=Din_043226 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology