Basic Information
Locus ID:
gene_1270
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 36953057 | 36964411 | - | gene_1270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 173,219.45 Da | 40.22 | 107.72 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 982 | 1276 | 6.00304E-90 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 357 | 645 | 3.28465E-104 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 671 | 871 | 7.13406E-94 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1299 | 1519 | 3.12815E-121 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 359 | 623 | 5.5E-31 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 689 | 823 | 3.8E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1318 | 1466 | 7.9E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 993 | 1228 | 6.8E-30 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 666 | 885 | 2.77E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1292 | 1530 | 6.02E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 983 | 1283 | 1.44E-46 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 352 | 653 | 2.09E-38 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 328 | 654 | 4.1E-53 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1284 | 1536 | 5.7E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 666 | 897 | 1.7E-68 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 944 | 1282 | 2.5E-51 | IPR036640 |
| SMART | SM00382 | AAA_5 | 698 | 871 | 3.1E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1327 | 1519 | 1.6E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 671 | 894 | 21.508717 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1301 | 1535 | 16.633457 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 361 | 637 | 37.548847 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 984 | 1264 | 32.006268 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 796 | 810 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 919 | 950 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 913 | 950 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_010691965.1 | putative ABC transporter C family member 15 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5B6Z841 | ABC-type xenobiotic transporter OS=Davidia involucrata OX=16924 GN=Din_009833 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology