HalophFGD

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Basic Information
Locus ID: gene_12609
Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544
Genome Assembly: Koichi Toyokura Assembly
Description: F-box kelch-repeat protein
Maps and Mapping Data
Chromosome Start End Strand ID
Super-Scaffold_12_Chr_6 12511761 12512599 + gene_12609
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.15 26,190.77 Da 42.44 83.04 -0.28
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 21 55 1.1E-8 IPR001810
SUPERFAMILY SSF81383 F-box domain 17 64 1.44E-10 IPR036047
Gene3D G3DSA:1.20.1280.50 - 16 56 1.2E-5 -
SMART SM00256 fbox_2 17 57 1.2E-4 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G50870.1 F-box and associated interaction domains-containing protein. 0
RefSeq XP_021850605.1 F-box protein At1g11270-like [Spinacia oleracea] 0
Swiss-Prot Q9C6J3 Putative F-box protein At1g50870 OS=Arabidopsis thaliana OX=3702 GN=At1g50870 PE=4 SV=1 0
TrEMBL A0A7C9CB63 F-box domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Aizoaceae Mesembryanthemum crystallinum 8 gene_12609, gene_12987, gene_12988, gene_12990, gene_15701 ...
gene_17078, gene_20705, gene_7947
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.