halophFGD

Basic Information

Locus ID: gene_12571

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: transposition, RNA-mediated

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_12_Chr_6	11305492	11307690	+	gene_12571

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.42	52,984.46 Da	41.80	84.41	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00303	retropepsin_like	388	464	6.78026E-12	-
Gene3D	G3DSA:2.40.70.10	Acid Proteases	386	480	2.0E-19	IPR021109
MobiDBLite	mobidb-lite	consensus disorder prediction	313	385	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	358	385	-	-
Coils	Coil	Coil	167	187	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_020272240.1	uncharacterized protein LOC109847422 [Asparagus officinalis]	0
TrEMBL	E2DN01	RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	2	gene_12571, gene_15568
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg55472, Sbi_jg8972
Arecaceae	Phoenix dactylifera	1	gene-LOC120107363
Asteraceae	Flaveria trinervia	4	Ftri10G03390, Ftri12G31698, Ftri2G11694, FtriNA14812
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g09880
Plumbaginaceae	Limonium bicolor	3	Lb1G00264, Lb3G20497, Lb4G25704
Poaceae	Echinochloa crus-galli	4	AH03.1315, CH03.1969, CH05.577, CH08.1150
Poaceae	Eleusine coracana subsp. coracana	35	gene-QOZ80_1AG0019390, gene-QOZ80_1BG0066180 ... gene-QOZ80_1BG0067080, gene-QOZ80_1BG0067700, gene-QOZ80_1BG0069300, gene-QOZ80_1BG0074530, gene-QOZ80_1BG0074640, gene-QOZ80_2AG0123690, gene-QOZ80_2BG0178930, gene-QOZ80_2BG0179290, gene-QOZ80_3BG0274590, gene-QOZ80_4AG0322600, gene-QOZ80_4AG0323530, gene-QOZ80_4AG0323950, gene-QOZ80_4BG0346930, gene-QOZ80_6AG0521910, gene-QOZ80_6AG0522850, gene-QOZ80_6BG0469260, gene-QOZ80_7AG0562030, gene-QOZ80_7AG0565250, gene-QOZ80_7AG0565790, gene-QOZ80_7BG0597510, gene-QOZ80_9AG0679840, gene-QOZ80_9AG0680620, gene-QOZ80_9AG0681730, gene-QOZ80_9AG0681740, gene-QOZ80_9BG0703180, gene-QOZ80_9BG0703330, gene-QOZ80_9BG0705840, gene-QOZ80_9BG0705990, gene-QOZ80_UnG0719230, gene-QOZ80_UnG0719250, gene-QOZ80_UnG0722140, gene-QOZ80_UnG0722970, gene-QOZ80_UnG0725070
Poaceae	Oryza sativa	2	ChrUn.fgenesh.mRNA.3, LOC_Os10g04210.1
Poaceae	Paspalum vaginatum	16	gene-BS78_01G262700, gene-BS78_02G095400, gene-BS78_K070500 ... gene-BS78_02G095500, gene-BS78_02G096200, gene-BS78_02G096600, gene-BS78_02G138900, gene-BS78_04G125400, gene-BS78_04G130800, gene-BS78_05G126800, gene-BS78_06G050000, gene-BS78_06G056600, gene-BS78_08G041200, gene-BS78_09G091400, gene-BS78_K179500, gene-BS78_K270700
Poaceae	Sporobolus alterniflorus	8	Chr01G020320, Chr09G007960, Chr10G004130, Chr20G010620 ... Chr25G012420, Chr27G000820, Chr27G001310, Chr27G001320
Poaceae	Zoysia japonica	11	nbis-gene-1312, nbis-gene-27882, nbis-gene-27898 ... nbis-gene-33840, nbis-gene-33894, nbis-gene-46925, nbis-gene-46926, nbis-gene-46927, nbis-gene-46928, nbis-gene-54284, nbis-gene-54872
Portulacaceae	Portulaca oleracea	10	evm.TU.LG03.1598, evm.TU.LG09.83, evm.TU.LG12.179 ... evm.TU.LG12.279, evm.TU.LG13.1372, evm.TU.LG17.1036, evm.TU.LG20.1444, evm.TU.LG21.1154, evm.TU.LG21.524, evm.TU.LG21.880
Solanaceae	Lycium barbarum	13	gene-LOC132607653, gene-LOC132607841, gene-LOC132607949 ... gene-LOC132609991, gene-LOC132610532, gene-LOC132611934, gene-LOC132612136, gene-LOC132612197, gene-LOC132612778, gene-LOC132613012, gene-LOC132613198, gene-LOC132613984, gene-LOC132637633