Basic Information
Locus ID:
gene_1251
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ferredoxin--NADP reductase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 36670150 | 36683134 | - | gene_1251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 78,576.16 Da | 55.48 | 74.27 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 186 | 229 | 1.20781E-18 | - |
| CDD | cd06208 | CYPOR_like_FNR | 419 | 709 | 4.23241E-178 | - |
| Pfam | PF00175 | Oxidoreductase NAD-binding domain | 563 | 677 | 2.5E-26 | IPR001433 |
| Pfam | PF13639 | Ring finger domain | 186 | 229 | 2.9E-12 | IPR001841 |
| SUPERFAMILY | SSF63380 | Riboflavin synthase domain-like | 414 | 555 | 7.66E-42 | IPR017938 |
| SUPERFAMILY | SSF57850 | RING/U-box | 181 | 240 | 5.46E-20 | - |
| SUPERFAMILY | SSF52343 | Ferredoxin reductase-like, C-terminal NADP-linked domain | 556 | 709 | 9.43E-42 | IPR039261 |
| Gene3D | G3DSA:3.40.50.80 | - | 547 | 708 | 1.1E-47 | IPR039261 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 235 | 3.8E-21 | IPR013083 |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 408 | 546 | 3.4E-55 | - |
| SMART | SM00184 | ring_2 | 187 | 228 | 4.8E-7 | IPR001841 |
| PIRSF | PIRSF000361 | Frd-NADP+_RD | 330 | 709 | 3.5E-156 | IPR015701 |
| PIRSF | PIRSF501178 | FNR-PetH | 330 | 709 | 7.3E-160 | IPR035442 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 229 | 12.769585 | IPR001841 |
| ProSiteProfiles | PS51384 | Ferredoxin reductase-type FAD binding domain profile. | 424 | 552 | 13.955819 | IPR017927 |
| PRINTS | PR00371 | Flavoprotein pyridine nucleotide cytochrome reductase signature | 663 | 671 | 1.5E-23 | IPR001709 |
| PRINTS | PR00371 | Flavoprotein pyridine nucleotide cytochrome reductase signature | 562 | 581 | 1.5E-23 | IPR001709 |
| PRINTS | PR00371 | Flavoprotein pyridine nucleotide cytochrome reductase signature | 459 | 469 | 1.5E-23 | IPR001709 |
| PRINTS | PR00371 | Flavoprotein pyridine nucleotide cytochrome reductase signature | 525 | 534 | 1.5E-23 | IPR001709 |
| PRINTS | PR00371 | Flavoprotein pyridine nucleotide cytochrome reductase signature | 640 | 656 | 1.5E-23 | IPR001709 |
| PRINTS | PR00371 | Flavoprotein pyridine nucleotide cytochrome reductase signature | 484 | 491 | 1.5E-23 | IPR001709 |
| PRINTS | PR00371 | Flavoprotein pyridine nucleotide cytochrome reductase signature | 592 | 601 | 1.5E-23 | IPR001709 |
| PRINTS | PR00371 | Flavoprotein pyridine nucleotide cytochrome reductase signature | 604 | 615 | 1.5E-23 | IPR001709 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| Coils | Coil | Coil | 681 | 701 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30510.1 | root FNR 2. Encodes a root-type ferredoxin:NADP(H) oxidoreductase. | 0 |
| RefSeq | XP_010691939.1 | ferredoxin--NADP reductase, root isozyme, chloroplastic [Beta vulgaris subsp. vulgaris] | 0 |
| Q41014 | Ferredoxin--NADP reductase, root isozyme, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MZV3 | Ferredoxin--NADP reductase, chloroplastic OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25048, jg38780 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1251, gene_4155 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023389 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29078, Sbi_jg3299 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6637 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000113 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11472, Sgl16872 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014838, gene:ENSEOMG00000034026 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0008240, CQ.Regalona.r1.2BG0021170 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30076710 |
| Apiaceae | Apium graveolens | 2 | Ag7G00984, Ag9G01148 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G020660 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711376 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3462.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G33727, Ftri6G17460 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G30510.2, AT4G05390.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007919m.g.v1.0, Thhalv10028734m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g26350.v2.2, Sp6g03700.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g046010.2N, BniB08g046650.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0564 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0669 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g04310 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0026s00033.v1.0, Dusal.0152s00027.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g18940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-636 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.465 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013047 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24591 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.124, AH03.217, BH03.281, BH03.3864, CH01.488, CH03.348 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0213530, gene-QOZ80_3BG0258650 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0153470.1, HORVU.MOREX.r3.5HG0516480.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_042482, gene-QYE76_061371, gene-QYE76_061458 |
| Poaceae | Oryza coarctata | 3 | Oco06G026240, Oco13G001400, Oco14G001510 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g57120.1, LOC_Os07g05400.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G058600, gene-BS78_02G033100 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0107017, Pt_Chr0107045, Pt_Chr0303523 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G003410, Chr04G030030, Chr0G012710, Chr0G020590 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G467100, Tel5E01G663700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG032870, gene_TRIDC2BG039370 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G252800.1, TraesCS2B02G272500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb059850_P001, Zm00001eb299960_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-16398, nbis-gene-51801 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2627, Zma_g5968 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.503, evm.TU.LG24.583 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g05330 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.872 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16824, nbisL1-mrna-25042 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5244 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19235 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.50 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016035 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-49, nbisL1-mrna-8627 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10278 |
| Salicaceae | Populus euphratica | 1 | populus_peu00858 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621690, gene-LOC132631649 |
| Solanaceae | Solanum chilense | 1 | SOLCI006735700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011672 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17029_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1172 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23790.v3.1 |