Basic Information
Locus ID:
gene_12509
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ABC transporter I family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 8984868 | 9001316 | + | gene_12509 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 54,699.36 Da | 39.30 | 105.87 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14831 | AP1_sigma | 270 | 412 | 6.64804E-100 | IPR044733 |
| CDD | cd03260 | ABC_PstB_phosphate_transporter | 32 | 236 | 2.90215E-89 | IPR005670 |
| Pfam | PF00005 | ABC transporter | 48 | 191 | 1.3E-35 | IPR003439 |
| Pfam | PF01217 | Clathrin adaptor complex small chain | 268 | 407 | 5.9E-53 | IPR022775 |
| SUPERFAMILY | SSF64356 | SNARE-like | 268 | 406 | 8.24E-47 | IPR011012 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 33 | 236 | 3.26E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 29 | 264 | 3.4E-65 | IPR027417 |
| Gene3D | G3DSA:3.30.450.60 | - | 268 | 424 | 2.3E-65 | - |
| SMART | SM00382 | AAA_5 | 57 | 245 | 1.7E-18 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 32 | 263 | 24.970083 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 163 | 177 | - | IPR017871 |
| ProSitePatterns | PS00989 | Clathrin adaptor complexes small chain signature. | 324 | 334 | - | IPR000804 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67940.1 | non-intrinsic ABC protein 3. member of NAP subfamily | 0 |
| RefSeq | XP_010675422.1 | ABC transporter I family member 17 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C9W0 | ABC transporter I family member 17 OS=Arabidopsis thaliana OX=3702 GN=ABCI17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZL06 | Adenosinetriphosphatase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6009 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12509, gene_21779 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009899 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g216020 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11176, Sbi_jg46152 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20491 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005460 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55720, Sgl60934 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016368, gene:ENSEOMG00000037563 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0004830, CQ.Regalona.r1.9AG0019790 |
| Anacardiaceae | Pistacia vera | 19 | pistato.v30047710, pistato.v30104150, pistato.v30104520 ... |
| Apiaceae | Apium graveolens | 3 | Ag11G03441, Ag3G00592, Ag4G02145 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G001970, COCNU_12G002800 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103719714, gene-LOC103719765, gene-LOC103721677 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1541.V1.1, AsparagusV1_08.3182.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G19430, Ftri3G03274, Ftri7G19848 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G17380.1, AT4G35410.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022887m.g.v1.0, Thhalv10026443m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g30690.v2.2, Sp7g33190.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g065210.2N, BniB05g002990.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq09G0012, Ceq09G0013 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl09G0013, Cgl09G0015, Cgl09G0017 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g07310, gene.Cymno10g00430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0118s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g05640, gene.Thate05g07840, gene.Thate08g24430 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5725 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.12, evm.TU.LG08.474 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037518 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G18143, Lb3G19267 |
| Poaceae | Echinochloa crus-galli | 3 | BH07.3999, CH01.247, CH06.2257 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0211080, gene-QOZ80_3AG0213610 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0516240.1 |
| Poaceae | Oryza coarctata | 3 | Oco05G025280, Oco05G026930, Oco06G026170 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g57040.1, LOC_Os03g59660.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G037400, gene-BS78_01G059600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0105254, Pt_Chr0105265, Pt_Chr0201032 |
| Poaceae | Sporobolus alterniflorus | 12 | Chr01G001970, Chr01G003500, Chr04G029960, Chr04G031160 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G661900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG061020, gene_TRIDC5BG065120 |
| Poaceae | Triticum aestivum | 2 | TraesCS5B02G423600.1, TraesCS5D02G430000.1 |
| Poaceae | Zea mays | 3 | Zm00001eb059770_P001, Zm00001eb062120_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15258 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2633, Zma_g347 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.1541, evm.TU.LG08.880, evm.TU.LG09.343 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g16440, gene.Posoc06g00990 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.1008 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15070 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-21874, nbisL1-mrna-3172 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000013l.564, evm.TU.utg000016l.4 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004425, Maker00016796 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10960, nbisL1-mrna-4563 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22534, nbisL1-mrna-23063 |
| Salicaceae | Populus euphratica | 2 | populus_peu27748, populus_peu29743 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614722 |
| Solanaceae | Solanum chilense | 1 | SOLCI001589700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003002 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11607_chr02_-, gene_16892 |
| Zosteraceae | Zostera marina | 2 | Zosma01g04450.v3.1, Zosma05g22490.v3.1 |