Basic Information
Locus ID:
gene_12461
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 7558815 | 7567449 | + | gene_12461 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 106,189.17 Da | 45.53 | 78.61 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 811 | 846 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 727 | 762 | 3.3E-5 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 174 | 412 | 1.85E-21 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 637 | 948 | 1.83E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 615 | 951 | 6.8E-122 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 176 | 410 | 8.3E-28 | - |
| SMART | SM00320 | WD40_4 | 765 | 804 | 0.32 | IPR001680 |
| SMART | SM00320 | WD40_4 | 855 | 894 | 4.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 680 | 719 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 631 | 669 | 0.27 | IPR001680 |
| SMART | SM00220 | serkin_6 | 81 | 401 | 2.7E-4 | IPR000719 |
| SMART | SM00320 | WD40_4 | 722 | 762 | 4.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 905 | 949 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 808 | 846 | 1.4E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 729 | 771 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 815 | 849 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 729 | 766 | 10.706503 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 77 | 401 | 12.767962 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 815 | 849 | 10.495596 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 833 | 847 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 833 | 847 | 8.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 706 | 720 | 8.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 749 | 763 | 8.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 600 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 593 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_010694977.2 | protein SPA1-RELATED 4 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8BAN3 | Protein kinase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g096680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology