Basic Information
Locus ID:
gene_12408
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 17448233 | 17456319 | - | gene_12408 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 99,499.80 Da | 62.41 | 55.84 | -1.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 370 | 398 | 1.6E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 404 | 431 | 9.9E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 363 | 399 | 3.34E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 401 | 433 | 8.1E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 362 | 400 | 1.2E-15 | - |
| SMART | SM00547 | zf_4 | 372 | 396 | 3.8E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 405 | 429 | 1.5E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 370 | 399 | 10.20666 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 403 | 432 | 9.2807 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 407 | 426 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 374 | 393 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 587 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 676 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 775 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 871 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 854 | 871 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 826 | - | - |
| Coils | Coil | Coil | 72 | 92 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010674734.3 | uncharacterized protein LOC104890827 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J5BTS4 | RanBP2-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_019979 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology