Basic Information
Locus ID:
gene_1240
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 1338639 | 1358462 | - | gene_1240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.07 | 129,903.50 Da | 61.17 | 58.96 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 52 | 1.20814E-4 | IPR001202 |
| CDD | cd00268 | DEADc | 526 | 720 | 2.67155E-94 | - |
| CDD | cd18787 | SF2_C_DEAD | 734 | 863 | 3.30314E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 539 | 707 | 6.6E-48 | IPR011545 |
| Pfam | PF00397 | WW domain | 22 | 52 | 4.6E-7 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 746 | 854 | 1.3E-33 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 586 | 870 | 9.57E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 3.77E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 489 | 724 | 1.0E-85 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 725 | 895 | 1.4E-60 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 17 | 59 | 6.3E-6 | - |
| SMART | SM00487 | ultradead3 | 534 | 737 | 1.4E-63 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.0E-7 | IPR001202 |
| SMART | SM00490 | helicmild6 | 774 | 854 | 3.6E-33 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 515 | 543 | 11.128675 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.4869 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 749 | 893 | 25.925152 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 546 | 720 | 30.993433 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 666 | 674 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1084 | 1113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1027 | 1083 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1026 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 907 | 1146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 982 | 1001 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_027068447.1 | DEAD-box ATP-dependent RNA helicase 46-like [Coffea arabica] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDW2 | DEAD-box ATP-dependent RNA helicase 40 OS=Spinacia oleracea OX=3562 GN=SOVF_190160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology