Basic Information
Locus ID:
gene_12324
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 10260834 | 10279618 | - | gene_12324 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 201,579.86 Da | 46.43 | 85.85 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1462 | 1870 | 1.76711E-122 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1509 | 1875 | 1.8E-82 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1454 | 1868 | 1.1E-95 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 181 | 649 | 7.82E-39 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1746 | 1873 | 6.8E-33 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1402 | 1639 | 1.9E-43 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 169 | 488 | 3.8E-51 | IPR011989 |
| SMART | SM00119 | hect_3 | 1473 | 1875 | 5.7E-87 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1577 | 1875 | 55.854828 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 1003 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1267 | 1293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 1106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1038 | 1052 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1125 | 1156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1064 | 1100 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_015893373.1 | E3 ubiquitin-protein ligase UPL3 [Ziziphus jujuba var. spinosa] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P4B4L5 | HECT-type E3 ubiquitin transferase OS=Ziziphus jujuba OX=326968 GN=LOC107427509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology